Data Download

• Repeatscape Data (Aug 4th, 2008)

• Homo Sapience (human) hg17, hg18
• Mus Musculus (mouse) mm9
• Drosophila Melanogaster (drosophila) R5.3
• Oryzias Latipes (medaka) version1.0

Data files of Repeatscape are available from the following folder:

• Base URL: http://repeatscape.utgenome.org/pub/download/20080814
• Folder structure:

  /(species name)/(sequence revision)/len(pattern length)

• File name pattern:

  (chr or scaffold name)_(F: forward, R: reverse strand).tsv.tar.gz

• http://repeatscape.utgenome.org/pub/download/20080814/human/hg17/len25/chr1_F.tsv.tar.gz

Repeatscape's data are provided in TSV (Tab-Separated Values) format with three columns (C0, C1, C2), each of which corresponds to a frequency count of no mismatch, one mismatch and two mismatches, respectively.